The most sequenced organisms in Gen Bank Homo sapiens 11.2 billion bases Mus musculus 7.5b Rattus norvegicus 57b Danjo rerio 2.1b Bos taurus 19b Zea mays 14b Oryza sativa (japonica) 12b Xenopus tropicalis 0.9b Canis familiaris 0.8b Drosophila melanogaster 0.7b Updated 8-29-05 Gen Bank release 149.0
The most sequenced organisms in GenBank Homo sapiens 11.2 billion bases Mus musculus 7.5b Rattus norvegicus 5.7b Danio rerio 2.1b Bos taurus 1.9b Zea mays 1.4b Oryza sativa (japonica) 1.2b Xenopus tropicalis 0.9b Canis familiaris 0.8b Drosophila melanogaster 0.7b Updated 8-29-05 GenBank release 149.0
(1 Gen Bank http://www.ncbi.nim.nihgov/genbank ◆美国NCBI的数据库,有部分蛋白质序列 ◆数据每天更新,每年发行( release)六版 ◆ Release(20061.1) 61, 132, 599 sequences ☆65369,091,950base ◆来源于205,00多个物种
(1)GenBank http://www.ncbi.nlm.nih.gov/Genbank 美国NCBI的数据库,有部分蛋白质序列 数据每天更新,每年发行(release)六版 Release (2006.1.1) 61,132,599 sequences 65,369,091,950 base 来源于205,000多个物种
◆每个序列有一个 latfile ◆每条序列有三个专有的编号或标识( identifier) ☆ Locus name(位点名) 令 Accession number(注册号或登陆号) &GI( GenInfo identifier NID( Nucleotide ID) ◆ LOCUS line
Locus name(位点名) Accession number (注册号或登陆号) GI(GenInfo identifier) NID(Nucleotide ID) 每个序列有一个flatfile 每条序列有三个专有的编号或标识(identifier) LOCUS line
he divisions(分支) of gen bank 分支缩写 分支全称 PRI灵长类序列( primate sequences ROD啮齿类序列( (rodent sequences) MAM其它哺乳类序列( other mammalian sequences) VRT其它脊椎动物序列( other vertebrate sequences ⅠNV无脊椎动物序列( invertebrate sequences) PLN植物、真菌和海藻类序列( plant, fungal, and algal sequences BCT细菌序列( bacterial sequences) VRL病毒序列( viral sequences) PHG噬菌体序列( bacteriophage sequences)
分支缩写 分支全称 PRI 灵长类序列 (primate sequences) ROD 啮齿类序列 (rodent sequences) MAM 其它哺乳类序列 (other mammalian sequences) VRT 其它脊椎动物序列 (other vertebrate sequences) INV 无脊椎动物序列 (invertebrate sequences) PLN 植物、真菌和海藻类序列 (plant, fungal, and algal sequences) BCT 细菌序列 (bacterial sequences) VRL 病毒序列 (viral sequences) PHG 噬菌体序列 (bacteriophage sequences) The divisions(分支) of GenBank
The divisions(分支) of gen Bank(续) 分支缩写 分支全称 SYN合成序列( synthetic sequences) UNA未注释的序列( unannotated sequences EST表达序列标签( expressed sequence tags PAT已专利的序列( patent sequences STS序列标签位点(seqμ uence tagged sites) GSS基因组序列( genome survey sequences HTG高产出基因组序列( high throughput genomic sequences HTC高产出cDNA序列( Chigh throughput CDNA Sequences)
The divisions(分支) of GenBank(续) 分支缩写 分支全称 SYN 合成序列 (synthetic sequences) UNA 未注释的序列 (unannotated sequences) EST 表达序列标签 (expressed sequence tags) PAT 已专利的序列 (patent sequences) STS 序列标签位点 (sequence tagged sites) GSS 基因组序列 (genome survey sequences) HTG 高产出基因组序列 (high throughput genomic sequences) HTC 高产出cDNA序列 (high throughput cDNA sequences)