Contents 18 Applications of Loop-Mediated Isothermal Amplificaton Methods(LAMP)for Identification and Diagnosis of Mycotic Diseases:Paracoccidioidomycosis and Ochroconis gallopava infection.417 Ayako Sano and Eiko Nakagawa Itano 19 Identification of the Genus Absidia(Mucorales,Zygomycetes): ensive Taxonomic Revision Kerstin Hoffmann .439 20 Molecular Characters of Zygomycetous Fungi.461 Xiao-yong Liu and Kerstin Voigt ndex.489
18 Applications of Loop-Mediated Isothermal Amplificaton Methods (LAMP) for Identification and Diagnosis of Mycotic Diseases: Paracoccidioidomycosis and Ochroconis gallopava infection . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 417 Ayako Sano and Eiko Nakagawa Itano 19 Identification of the Genus Absidia (Mucorales, Zygomycetes): A Comprehensive Taxonomic Revision . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 439 Kerstin Hoffmann 20 Molecular Characters of Zygomycetous Fungi . . . . . . . . . . . . . . . . . . . . . . . 461 Xiao-yong Liu and Kerstin Voigt Index . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 489 Contents xv
Contributors Dilip K.Arora National Bureau of Agriculturally Important Microorganism (ICAR),Mau,Uttar Pradesh 275101,India,aroradilip@yahoo.co.in Renuka N.Attanayake Department of Plant Pathology,Washington State University,Pullman,WA 99164,USA Kurt Brunner Institute of Chemical Engineering.Research Area Gene Technology and Applied Biochemistry.Gene Technology Group,Vienna University of Technology,Getreidemarkt 9,A-1060 Vienna Simon Bulman Plant&Food Research.Private Bag 4704.Christchurch New Zealand:Bio-Protection Research Centre,Lincoln University,P.O.Box 84, 7647 Canterbury,New Zealand Francesca Cardinale DiVaPRA-Plant Pathology.University of Turin,I-10095 Grugliasco,Turin,Italy v.Washing on State Universitv Pullma n.WA 164.USA:USDA ARS Gra etics and Physio logy Research Unit,Washington State University,Pullman,WA 99164.USA w-chen(@wsu.edu Silvia D'Arezzo National Institute for Infectious Diseases"Lazzaro Spallanzani" I.R.C.C.S.Via Portuense 292,00149 Rome,Italy Frank M.Dugan USDA-ARS,Washington State University,Pullman,WA 99163-6402,USA Raimund Eck SIRS-Lab GmbH,Winzerlaer Str.2.07745 Jena,Germany xvii
Contributors Dilip K. Arora National Bureau of Agriculturally Important Microorganisms (ICAR), Mau, Uttar Pradesh 275101, India, aroradilip@yahoo.co.in Renuka N. Attanayake Department of Plant Pathology, Washington State University, Pullman, WA 99164, USA Kurt Brunner Institute of Chemical Engineering, Research Area Gene Technology and Applied Biochemistry, Gene Technology Group, Vienna University of Technology, Getreidemarkt 9, A-1060 Vienna Simon Bulman Plant & Food Research, Private Bag 4704, Christchurch, New Zealand; Bio-Protection Research Centre, Lincoln University, P.O. Box 84, 7647 Canterbury, New Zealand Francesca Cardinale DiVaPRA – Plant Pathology, University of Turin, I-10095 Grugliasco, Turin, Italy Weidong Chen Department of Plant Pathology, Washington State University, Pullman, WA 99164, USA; USDA ARS Grain Legume Genetics and Physiology Research Unit, Washington State University, Pullman, WA 99164, USA, w-chen@wsu.edu Silvia D’Arezzo National Institute for Infectious Diseases “Lazzaro Spallanzani” I.R.C.C.S., Via Portuense 292, 00149 Rome, Italy Frank M. Dugan USDA-ARS, Washington State University, Pullman, WA 99163-6402, USA Raimund Eck SIRS-Lab GmbH, Winzerlaer Str. 2, 07745 Jena, Germany xvii
Contributor Martin Eckart Institute of Microbiology.School of Biology and Pharmacy University of Jena,Neugasse 25.07743 Jena,Germany,martin.eckart@uni-jena.de Hesham Elhariry Biological Sciences Department,Faculty of Science,Taif University,P.O.Box 888 Taif,Kingdom of Saudi Arabia Katerina fliegerova department of biological Basis of Food Ouality and safety Institute of Animal Phy and Genetics,Czech Academy of Sci ,1 Prague 4.Czech Republic.fliegerova@iapg.cas.c es,V.v.i Tatiana Gagkaeva Laboratory of Mycology and Phytopathology.All-Russian Institute of Plant Protection (VIZR).196608 St.Petersburg-Pushkin,Russia, t.gagkaeva@yahoo.com Youssuf Gherbawy Botany Department,Faculty of Science.South Valley University.83523 Qena.Egypt Paolo Gonthier Di.Va.P.R.A.Depart ent of Exploitation and Protection of the estry Resources athology.University of Torino,via Maria Grazia Paglia National Institute for Infectious Diseases"Lazzaro Spallan- zani"I.R.C.C.S.Via Portuense 292,00149 Rome,Italy Fabio Guglielmo Di.Va.P.R.A.,Department of Exploitation and Protection of the agricultural and Forestry resou es,Plant Pathology,University of Torino via L.da Vinci 44.I-10095 Grugliasco Liang-Dong Guo Systematic Mycology Lichenology ratory,Institute of Microbiology.Chinese Academy of Sciences,Beijing 100101.China,guold@sun. Im.ac.cn Kerstin Hoffmann Institute of Microbiology,School of Biology and Pharmacy University of Jena,Neugasse 25,07743 Jena,Germany,Hoffmann.Kerstin@ uni-iena de Beatriz lamanaka Departamento de Biologia Geral,Cent o de ciencias biologi adual de Londrina.Caixa Postal 6001.CEP 86051-9 70 Londrina-Parana,Brazi Eiko Nakagawa Itano Department of Pathological Science.CCB.State Uni- versity of Londrina,P.O.Box 6001,86051-970 Londrina,Parana,Brazil, itanoeiko@hotmail.com
Martin Eckart Institute of Microbiology, School of Biology and Pharmacy, University of Jena, Neugasse 25, 07743 Jena, Germany, martin.eckart@uni-jena.de Hesham Elhariry Biological Sciences Department, Faculty of Science, Taif University, P.O. Box 888 Taif, Kingdom of Saudi Arabia Katerina Fliegerova´ Department of Biological Basis of Food Quality and Safety, Institute of Animal Physiology and Genetics, Czech Academy of Sciences, v.v.i., Vı´denˇska´ 1083, 14220 Prague 4, Czech Republic, fliegerova@iapg.cas.cz Tatiana Gagkaeva Laboratory of Mycology and Phytopathology, All-Russian Institute of Plant Protection (VIZR), 196608 St. Petersburg-Pushkin, Russia, t.gagkaeva@yahoo.com Youssuf Gherbawy Botany Department, Faculty of Science, South Valley University, 83523 Qena, Egypt Paolo Gonthier Di.Va.P.R.A., Department of Exploitation and Protection of the Agricultural and Forestry Resources, Plant Pathology, University of Torino, via L. da Vinci 44, I-10095 Grugliasco (TO), Italy Maria Grazia Paglia National Institute for Infectious Diseases “Lazzaro Spallanzani” I.R.C.C.S., Via Portuense 292, 00149 Rome, Italy Fabio Guglielmo Di.Va.P.R.A., Department of Exploitation and Protection of the Agricultural and Forestry Resources, Plant Pathology, University of Torino, via L. da Vinci 44, I-10095 Grugliasco (TO), Italy Liang-Dong Guo Systematic Mycology & Lichenology Laboratory, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China, guold@sun. im.ac.cn Kerstin Hoffmann Institute of Microbiology, School of Biology and Pharmacy, University of Jena, Neugasse 25, 07743 Jena, Germany, Hoffmann.Kerstin@ uni-jena.de Beatriz Iamanaka Departamento de Biologia Geral, Centro de Cieˆncias Biolo´gicas, Universidade Estadual de Londrina, Caixa Postal 6001, CEP 86051-970 Londrina-Parana´, Brazil Eiko Nakagawa Itano Department of Pathological Science, CCB, State University of Londrina, P.O. Box 6001, 86051-970 Londrina, Parana´, Brazil, itanoeiko@hotmail.com xviii Contributors
Contributors Narendra Kadoo PMB Group,Biochemical Sciences Division,National Chemical Laboratory,Pune 411008,Maharashtra,India,ny.kadoo@ncl.res.in Claudia Kesselboth Botany Department,Faculty of Science.South Valley University,83523 Qena,Egypt rtin Kirchmair Institute of Microbiology.Leopold Franzens-University Innsbruck,Technikerstr.25,6020 Innsbruck,Austria,Martin.Kirchmair@uibk.ac.at Bandamaravuri Kishore Babu National Bureau of Agriculturally Important Microorganisms (ICAR),Mau,Uttar Pradesh 275101,India,aroradilip@yahoo. co.in:present address:Environmental Microbiology Lab,Department of Envi- ronmental Engineering.Chosun University,Gwang ju-501759,South Korea kishore_bandam@yahoo.co.in Mare Lehmann SIRS-Lab GmbH,Winzerlaer Str.2,07745 Jena,Germany Xiao-yong Liu Key Laboratory of Systematic Mycology and Lichenology.Insti tute of Microbiology,Chinese Academy of Sciences,No.I Beichen West Road, Chaoyang District,Beijing 100101,P.R.China,liuxiaoyong@im.ac.cn Robert L.Mach Institute of Chemical Engineering,Research Area Gene Tech- nology and Applied Biocher y,Gene Technolog Group.Vier nology. eidemarkt 9A-1060 Vienna,Austria,rmach@n ac.at Sigrid Neuhauser Institute of Microbiology.Leopold Franzens-University Innsbruck,Technikerstr.25,6020 Innsbruck.Austria George Newcombe Department of Forest Resources,and Center for Research on Invasive Species and Small Populations.University of Idaho.Moscow.ID 83844- 1133.USA.georgen@uidaho.edu ment of Exploitation and Protection of the005rooti uitot stry Resource t Pathology,Uni ersity of Torino,via Evans N.Njambere Department of Plant Pathology,Washington State University, Pullman,WA 99164.USA Maria Helena Pelegrinelli Fungaro Departamento de Biologia Geral,Centro de Ciencias Biologicas,Universidade Estadual de Londrina,Caixa Postal 6001.CEP 86051-970.Londrina-Parana Brazil,fungaro@uel.br
Narendra Kadoo PMB Group, Biochemical Sciences Division, National Chemical Laboratory, Pune 411008, Maharashtra, India, ny.kadoo@ncl.res.in Claudia Kesselboth Botany Department, Faculty of Science, South Valley University, 83523 Qena, Egypt Martin Kirchmair Institute of Microbiology, Leopold Franzens – University Innsbruck, Technikerstr. 25, 6020 Innsbruck, Austria, Martin.Kirchmair@uibk.ac.at Bandamaravuri Kishore Babu National Bureau of Agriculturally Important Microorganisms (ICAR), Mau, Uttar Pradesh 275101, India, aroradilip@yahoo. co.in; present address: Environmental Microbiology Lab, Department of Environmental Engineering, Chosun University, Gwang ju-501759, South Korea, kishore_bandam@yahoo.co.in Marc Lehmann SIRS-Lab GmbH, Winzerlaer Str. 2, 07745 Jena, Germany Xiao-yong Liu Key Laboratory of Systematic Mycology and Lichenology, Institute of Microbiology, Chinese Academy of Sciences, No. 1 Beichen West Road, Chaoyang District, Beijing 100101, P. R. China, liuxiaoyong@im.ac.cn Robert L. Mach Institute of Chemical Engineering, Research Area Gene Technology and Applied Biochemistry, Gene Technology Group, Vienna University of Technology, Getreidemarkt 9, A-1060 Vienna, Austria, rmach@mail.zserv.tuwien. ac.at Sigrid Neuhauser Institute of Microbiology, Leopold Franzens – University Innsbruck, Technikerstr. 25, 6020 Innsbruck, Austria George Newcombe Department of Forest Resources, and Center for Research on Invasive Species and Small Populations, University of Idaho, Moscow, ID 83844- 1133, USA, georgen@uidaho.edu Giovanni Nicolotti Di.Va.P.R.A., Department of Exploitation and Protection of the Agricultural and Forestry Resources, Plant Pathology, University of Torino, via L. da Vinci 44, I-10095 Grugliasco (TO), Italy, giovanni.nicolotti@unito.it Evans N. Njambere Department of Plant Pathology, Washington State University, Pullman, WA 99164, USA Maria Helena Pelegrinelli Fungaro Departamento de Biologia Geral, Centro de Cieˆncias Biolo´gicas, Universidade Estadual de Londrina, Caixa Postal 6001, CEP 86051-970, Londrina-Parana´, Brazil, fungaro@uel.br Contributors xix
Manuel Pereiro Department of Dermatology,Laboratory of Mycology.Faculty of Medicine,University Hospital Complex of Santiago de Compostela.C/San Francisco S/N.15706 Santiago de Compostela,Spain Lidia Perez-Perez Department of Dermatology,University Hospital Complex of Vigo.C/Porrino 5,36209 Vigo.Spain,lidiacomba@yahoo.es Lorenza Putignani Microbiology Unit,Children's Hospital,Healthcare and Research Institute Bambino Gesu,Piazza Sant'Onofrio 4.00165 Rome.Italy Ratul Saikia Biotechnology Division,North-East Institute of Science& Technology,Jorhat 785006.Assam,India,rsaikial9@yahoo.com Ayako Sano Medical Mycology Research Center,Chiba University,1-8-1, Inohana.Chuo-ku,260-8673 Chiba,Japan,ayal@faculty.chiba-u.jp Daniele Sartori Centro de Ciencias Biologica Geral univ Londrina-Parand,Brazi Roland P.H.Schmitz SIRS-Lab GmbH,Winzerlaer Str.2,07745 Jena,Germany, schmitz@sirs-lab.com Otmar Spring Institute of Botany,University of Hohenheim,70593 Stuttgart, Germany,spring@uni-hohenheim.de Marta Hiromi Taniwaki Departamento de Biologia Geral,Centro de Ciencias Biologicas.Universidade Estadual de Londrina,Caixa Postal 6001.CEP 86051- 970,Londrina-Parana,Brazil Marco Thines Institute of Botany,University of Hohenheim,70593 Stuttgart, Germany Jaime Toribo Department of Dermatology,Labora tory of Mycology.Faculty of Medicin University Hospital Complex of antiago de Compostela,C/San Francisco S/N.15706 Santiago de Compostela,Spain Danila Valentino DiVaPRA-Plant Pathology,University of Turin,I-10095 Grugliasco,Turin,Italy
Manuel Pereiro Department of Dermatology, Laboratory of Mycology, Faculty of Medicine, University Hospital Complex of Santiago de Compostela, C/San Francisco S/N, 15706 Santiago de Compostela, Spain Lidia Pe´rez-Pe´rez Department of Dermatology, University Hospital Complex of Vigo, C/Porrin˜o 5, 36209 Vigo, Spain, lidiacomba@yahoo.es Lorenza Putignani Microbiology Unit, Children’s Hospital, Healthcare and Research Institute Bambino Gesu`, Piazza Sant’Onofrio 4, 00165 Rome, Italy Ratul Saikia Biotechnology Division, North-East Institute of Science & Technology, Jorhat 785006, Assam, India, rsaikia19@yahoo.com Ayako Sano Medical Mycology Research Center, Chiba University, 1-8-1, Inohana, Chuo-ku, 260-8673 Chiba, Japan, aya1@faculty.chiba-u.jp Daniele Sartori Centro de Cieˆncias Biolo´gicas, Departamento de Biologia Geral, Universidade Estadual de Londrina, Caixa Postal 6001, CEP 86051-970, Londrina-Parana´, Brazil Roland P.H. Schmitz SIRS-Lab GmbH, Winzerlaer Str. 2, 07745 Jena, Germany, schmitz@sirs-lab.com Otmar Spring Institute of Botany, University of Hohenheim, 70593 Stuttgart, Germany, spring@uni-hohenheim.de Giacomo Tamietti DiVaPRA – Plant Pathology, University of Turin, I-10095 Grugliasco, Turin, Italy, giacomo.tamietti@unito.it Marta Hiromi Taniwaki Departamento de Biologia Geral, Centro de Cieˆncias Biolo´gicas, Universidade Estadual de Londrina, Caixa Postal 6001, CEP 86051- 970, Londrina-Parana´, Brazil Marco Thines Institute of Botany, University of Hohenheim, 70593 Stuttgart, Germany Jaime Toribio Department of Dermatology, Laboratory of Mycology, Faculty of Medicine, University Hospital Complex of Santiago de Compostela, C/San Francisco S/N, 15706 Santiago de Compostela, Spain Danila Valentino DiVaPRA – Plant Pathology, University of Turin, I-10095 Grugliasco, Turin, Italy xx Contributors