DDBJ NIG (National Institute of Genetics CIB(Center for Information Biology) http://www.ddbj.nig.ac.jp/index-e.html DDBJ Accession DNA Protein AllDBs Taxonomy Site Search Accession numbers Go DNA Data Bank of Japan DDBJ OuniProt OFDB ODAD OPRF OPatent 2>more HOME Submission How to Use Search/Analysis FTP/WebAPI Report/Statistics Contact Us Japonese About DDBJ DDB]:DNA Data Bank of Japan 多How to Use DDBJ (DNA Data Bank of Japan)is Q and A one of three summit databanks that construct DSequence Submission DDBJ/EMBL/GenBank International Nucleotide Sequence Databaso. through close collaboration with EBI in Europe and NC8I in USA SAKURA Mass Submission Hot Topics More Data Updates ,Aug.28.2009 Change of directory structure of anonymous FTP site:Made a new directory "tpa" OSearch Aue.13.2009 A new hieh speed BL AST API was opened to the public from WABI ，getent世y Aug.11.2009 Redistr bution of genomic sequence build 4)of the cultivar Nipponbare of Japanese ARSA rice (Oryza sativa Japonica Group assiened with RAP annotation TXSearch ,BLAST Maintenance More PSI-BLAST Sep.11.2009 Suspension of some parts of DDBJ activities dur ing national holidays Sep.19-23) FASTA ·Ae.04.2009 Request for re-submission of the queries (Re:Homology Search and Clustalw SSEARCH temporary dovn(Aug3》 DPhyloeenetics un23.2009 Completion of a bue fixation:error in displaying suppressed entries by getentry Clustalw Sequence Data Submission FTP/Web API DGenome Analysis Submit my sequences FTP ftp.ddbj.nie.ac.jp GIB Orientation for the data submission Download data files
NIG (National Institute of Genetics CIB (Center for Information Biology) http://www.ddbj.nig.ac.jp/index-e.html DDBJ
三大数据库之间的联系 NIH Entrez NCBI -Submissions GenBank -Updates -Submissions -Updates EMBL DDBJ CIB EBI NIG -Submissions -Updates SRS getentry EMBL
三大数据库之间的联系
RefSeg数据库 提供非冗余的，高质量的，经检验校正的序列 信息； 。 包括染色体、基因组（细胞器、病毒、质粒）、 蛋白质、RNA等 ·序列文件的标识符： mRNA序列：NM123456 非编码RNA:NR123456 蛋白质序列：NP123456 http://www.ncbi.nlm.nih.gov/RefSeq
RefSeq数据库 提供非冗余的，高质量的，经检验校正的序列 信息； 包括染色体、基因组（细胞器、病毒、质粒）、 蛋白质、RNA等； 序列文件的标识符： mRNA序列：NM_123456 非编码RNA：NR_123456 蛋白质序列： NP_123456 http://www.ncbi.nlm.nih.gov/RefSeq
dbEST:表达序列标签数据库 最多的20个物种： Homo sapiens (human) 8,134,045 Mus musculus domesticus (1m0u3e】 4,850,243 Bo3 taurus(cattle】 1,497,461 Sus scrofa (pig) 1,470,315 Danio rerio (zebrafish) 1,358,222 Arabidopsis thaliana (thale cress) 1,276,692 Xenopus tropicalis 1,271,375 Oryza sativa (rice) 1,211,418 Zea mays (maize) 1,159,264 Triticum aestivum (wheat) 1,050,926 Rattus norvegicus sp.(rat) 889,896 Ciona intestinalis 686,396 Xenopus laevis (African clawed frog) 677,784 Gallus gallus (chicken) 599,330 Brassica napus (oilseed rape) 567,177 Drosophila melanogaster (fruit fly) 542,180 Hordeum vulgare subsp.vulgare (barley) 437,713 Salmo salar (Atlantic salmon) 432,630 Glycine max (soybean) 392,321 Canis familiaris (dog) 365,909 http:lw.ncbi.nlm.nih.gov/dbEST/2007.08,总序列45,660,524条
dbEST: 表达序列标签数据库 最多的20个物种： http://www.ncbi.nlm.nih.gov/dbEST/ 2007.08，总序列45,660,524条
UniGene: An Organized View of the Transcriptome 为每一个基因创造一个唯一的条目，收集这个基因所有的EST$ Species UniGene Entries Chordata Mammalia Bos taurus (cow) 43,490 Canis lupus familiaris (dog) 24,459 Equus caballus (horse) 5,992 Homo sapiens (human) 123,173 Macaca fascicularis (crab-eating macaque) 12,659 Macaca mulatta (rhesus monkey) 6,489 Monodelphis domestica(gray short-tailed opossum) 693 Mus musculus (mouse) 79,222 Ornithorhynchus anatinus (platypus) 749 Oryctolagus cuniculus(rabbit) 6,796 Ovis aries (sheep) 19,084 Papio anubis (olive baboon) 11,904 Peromyscus maniculatus (deer mouse) 10,429 Pongo abelii(Sumatran orangutan) 7,286 http://www.ncbi.nlm.nih.gov/unigene
UniGene: An Organized View of the Transcriptome 为每一个基因创造一个唯一的条目，收集这个基因所有的ESTs http://www.ncbi.nlm.nih.gov/unigene