厚壁菌门，柔膜菌门和放线菌 18.1 Nonsporulating Firmicutes 18.2 Endospore-Forming Firmicutes 18.3 Mollicutes: The Mycoplasmas 18.4 Actinobacteria: Coryneform and Propionic Acid Bacteria 18.5 Actinobacteria: Mycobacterium 18.6 Filamentous Actinobacteria: Streptomyces and Relatives 18.7 Cyanobacteria 蓝细菌 18.8 Prochlorophytes 原绿生物 18.9 The Chlamydia 衣原体 The Planctomycetes 浮霉菌门 18.10 Planctomyces: A Phylogenetically Unique Bacterium 疣微菌门 18.11 Verrucomicrobium and Prosthecobacter疣微菌属和突柄杆菌属 18.12 Bacteroides and Flavobacterium 18.13 Acidobacteria 酸杆菌 The Cytophaga Group 噬纤维菌 18.14 Cytophaga and Relatives 18.15 Chlorobium and Other Green Sulfur Bacteria 绿硫杆菌属等绿色硫细菌 18.16 Spirochetes螺旋体 18.17 Deinococcus and Thermus Hyperthermophilic Bacteria 18.19 Thermotoga and Thermodesulfobacterium 18.20 Aquifex, Thermocrinis, and Relatives Chen Feng, Microbiology, SJTU 18.20 Aquifex, Thermocrinis, and Relatives 18.21 Nitrospira and Deferribacter

I. The Phylogeny of Bacteria • 17.1 Phylogenetic Overview of Bacteria II. Phototrophic, Chemolithotrophic, and Methanotrophic Proteobacteria • 17.2 Purple Phototrophic Bacteria • 17.3 The Nitrifying Bacteria • 17.4 Sulfur- and Iron-Oxidizing Bacteria • 17.5 Hydrogen-Oxidizing Bacteria • 17.6 Methanotrophs and Methylotrophs III. Aerobic and Facultatively Aerobic Chemoorganotrophic Proteobacteria • 17.7 Pseudomonas and the Pseudomonads • 17.8 Acetic Acid Bacteria • 17.9 Free-Living Aerobic Nitrogen-Fixing Bacteria • 17.10 Neisseria, Chromobacterium, and Relatives • 17.11 Enteric Bacteria • 17.12 Vibrio, Aliivibrio, and Photobacterium • 17.13 Rickettsias V. Delta- and Epsilonproteobacteria • 17.17 Myxobacteria • 17.18 Sulfate- and Sulfur-Reducing Proteobacteria • 17.19 The Epsilonproteobacteria

上海交通大学：《微生物学 Microbiology》课程教学资源（双语课件）Lecture 16.3 Microbial Evolution and Systematics 微生物进化与系统分类（Microbial Systematics 微生物系统分类学）

16.5 The Evolutionary Process演化过程 16.6 Evolutionary Analysis: Theoretial Aspects 16.8 Microbial Phylogeny 微生物系统发育树 16.9 Applications of SSU rRNA phylogenetic Methods

12.1 Early Microbial Life on Earth 12.1.1 Conditions on Early Earth: hot and Anoxic 12.1.2 Evidence for Life on early Earth: Stromatolites 叠层石 12.2 Origin of Cellular life 12.3 Primitive Life: Early Metabolism 12.4 Eukaryotes and Organelles: Endosymbiosis 内共生

I. Symbioses between Microorganisms II. Plants as Microbial Habitats 2. The Legume–Root Nodule Symbiosis 3. Agrobacterium and Crown Gall Disease 4. Mycorrhizae III. Animals as Microbial Habitats 5. The Mammalian Gut 6. The Rumen and Ruminant Animals 7. The Human Microbiome 8. Termites

上海交通大学：《微生物学 Microbiology》课程教学资源（双语课件）Lecture 15.2 Microbial Ecology（Nutrient Cycles, Biodegradation, and Bioremediation）

15.1 Populations, Guilds, and Communities 15.2 Environments and Microenvironments 环境与微环境 15.3 Microbial Growth on Surfaces and Biofilms 表面生长与生物膜 15.4 Terrestrial Environments 15.5 Freshwater habitats 淡水生境 15.6. Marine Microbiology

上海交通大学：《微生物学 Microbiology》课程教学资源（双语课件）Lecture 14.2 Methods in Microbial Ecology and Test（MEASURING MICROBIAL ACTIVITIES IN NATURE）

14.1 Enrichment and Isolation 14.2 Isolation 14.3 General Staining Methods 14.4 Phylogenetic staining using FISH 系统发育学染色: FISH技术 14.5 PCR Methods of Microbial Community Analysis 14.6 Microarrays and Microbial Diversity: Phylochips 系统发育学微阵列（芯片） 14.7 Environmental Genomics and Related Methods