所有数据来源 基因组序列:GI EST序列:TGI Genebank ESTobacco(European Sequencing of Tobacco Projecthttp://www.estobacco.info/) TAB(Transcriptome Analysis of BY-2 http://mrg.pscrikengojp/strc/
所有数据来源 基因组序列:TGI EST序列:TGI Genebank ESTobacco (European Sequencing of Tobacco Project http://www.estobacco.info/) TAB (Transcriptome Analysis of BY-2, http://mrg.psc.riken.go.jp/strc/)
RGA( Reistance gene analogue)的背景介绍 Representative gene Pto LZ/CC NBS LRR Mi/Prf TIR NBS LRR TM LRR Cf4/C/9 TM LRR PK Xa21
RGA(Reistance gene analogue)的背景介绍 I II III IV V PK LZ/CC NBS LRR TIR TM PK Pto Mi/Prf Xa21 Cf4/Cf9 NBS LRR N LRR TM LRR Representative gene
分析流程 已知的NBS抗 同源 清理 基因 性基因 序列 搜索 拼接 预测 系统 寻找 发育 结构 蛋白
分析流程 已知的NBS抗 性基因 同源 序列 搜索 清理 拼接 基因 预测 蛋白 预测 寻找 结构 域 系统 发育 树
已知的NBS类抗性基因 Class motif Plant Pathogen Avr gene CC NB-ARC LRR5 Q42484 thaliana syringae pv. tomato P4959 LZ-NBS-LRR TIR NB-ARC RPP1 Arabidopsis AAC72979, thaliana LZ-NBS-LRR CC NB-ARC LRR2 RPP8 Arabidops Peronospora AAC83165, LZ-NBS-LRR NB-ARC RPP1 Arabidopsis thaliana parasitica T51185 AAF42832 LZ-NBS-LRR NB-ARC LRR5 RPM Pseudomona avrB, avrRp CAA61131 syringae TIR-NBS- TR NB-ARC RPS4 Arabidopsis Pseudomonas avros CAB53785 LRR7 thaliana TIR-NBS- IR NB-ARC RPP5 Arabidopsi AAF08790 LRR9 thaliana parasitIca LZ- NBS- CC NB-ARC LRR4 RPS5 Arabidopsi Q8L3R3 LRR thaliana ningde, Perano NBS-LRR Bs2 Capsicum CAC32382, annuum tris amplest CC-NBS-LRR Mlal Hordeum vulgare Erysiphe gramin AAG37356 TIR-NBS- TIR NB-ARC L6 Linum Melampsora lini al6 Q40253 usitatissimum Q40254
已知的NBS类抗性基因 Class motif R gene Plant Pathigen Avr gene Accession LZ-NBS-LRR CC NB-ARC LRR5 RPS2 Arabidopsis thaliana Pseudomonas syringae pv.tomato & maculicola avrRpt2 Q42484, P49597 LZ-NBS-LRR TIR NB-ARC LRR9 RPP1 Arabidopsis thaliana Peranospora parasitica AAC72979, LZ-NBS-LRR CC NB-ARC LRR2 RPP8 Arabidopsis thaliana Peranospora parasitica AAC83165, LZ-NBS-LRR NB-ARC RPP1 3 Arabidopsis thaliana Peranospora parasitica Q9M667, T51185, AAF42832, LZ-NBS-LRR NB-ARC LRR5 RPM 1 Arabidopsis thaliana Pseudomonas syringae pv.maculitola avrB,avrRp ml CAA61131 TIR-NBSLRR TIR NB-ARC LRR7 RPS4 Arabidopsis thaliana Pseudomonas syringae avrRps4 CAB53785, TIR-NBSLRR TIR NB-ARC LRR9 RPP5 Arabidopsis thaliana Peranospora parasitica avrRp5 AAF08790 LZ- NBSLRR CC NB-ARC LRR4 RPS5 Arabidopsis thaliana Pseudomonas syringae,Peranospor a parasitica avrRphB Q8L3R3, NBS-LRR NB-ARC Bs2 Capsicum annuum Xanthomonas campestris pv.resicatoria avrBs2 CAC32382, CC-NBS-LRR Mla1 Hordeum vulgare Erysiphe graminis f.sp.hordei AAG37356 TIR-NBSLRR TIR NB-ARC L6 Linum usitatissimum Melampsora lini AL6 Q40253, Q40254
TIR-NBS TIR NB-ARC Linum Melampsora lini AM AAB47618 LRR5 LZ-NBS-LRR NB-ARC LRR3 Rx2 Tomato virus x PVX cAB56299 esculentum LZ-NBS-LRR NB-ARC Prf Lycopersicon Pseudomonas esculentum syringae pv. tomato LZ-NBS-LRR NB-ARC LRR2 unknown C67238 AAC67237 AAC32252 NBS-LRR CC NB-ARC 12C-1 Lycopersicon Fusarium oxysporum unknown AAB63274 LRR11 NBS-LRR NB-ARC V-5 Lycopers Tomato spotted silt AAG31013 virus(TSwv TIR NB-ARC N Nicotiana Tobacco masaic TMV Q40392 LR tabacum NBS-LRR CC NB-ARC Oryza sativa Xanthomonas avrO 048647 LRR10 NBS-LRR NB-ARC2 LRR2 Pib Oryza sativa ignaporthe grisea BAA76281 NBS-LRR -ta Oryza sativa AAK00132 NBS-LRR CC NB-ARC Cre3 Heterodera avenge AAC05834 LZ-NBS-LRR RPP4 AAM1846 LZ-NBS-LRR Pseudomonas Q39214 syringa CC-NBS-LRR Fusanum oxysporum AAD27815 f sp lycopersici race NBS-LRR 12C-2 Lycopersicon Fusarium oxysporum unknown AAB63275 12C-3 Lycopersicon Fusanum oxysporum unknown AAB63276 esculentum AAQ75745
TIR-NBSLRR TIR NB-ARC LRR5 M Linum usitatissimum Melampsora lini AM AAB47618 , LZ-NBS-LRR NB-ARC LRR3 Rx2 Lycopersicon esculentum Tomato virus X PVX CAB56299 , LZ-NBS-LRR NB-ARC Prf Lycopersicon esculentum Pseudomanas syringae pv.tomato avrPto AAC49408 LZ-NBS-LRR NB-ARC LRR2 Mi Lycopersicon esculentum Meloidogyne javanica unknown AAC67238 , AAC67237 , AAC32252 NBS-LRR CC NB-ARC LRR11 I2C-1 Lycopersicon esculentum Fusarium oxysporum unknown AAB63274 NBS-LRR NB-ARC Sw-5 Lycopersicon esculentum Tomato spotted silt virus(TSWV) AAG31013 TIR-NBSLRR TIR NB-ARC LRR8 N Nicotiana tabacum Tobacco Masaic Virus TMV Q40392 NBS-LRR CC NB-ARC LRR10 Xal Oryza sativa Xanthomonas oryzae pv.oryzae avrXoo O48647 NBS-LRR NB-ARC2 LRR2 Pib Oryza sativa Magnaporthe grisea BAA76281 , NBS-LRR NBS-LRR Pi-ta Oryza sativa Magnaporthe grisea AAK00132 NBS-LRR CC NB-ARC Cre3 Triticum aestivum Heterodera avenae AAC05834 LZ-NBS-LRR RPP4 Arabidopsis thaliana AAM1846 2 LZ-NBS-LRR RPM 1 Arabidopsis thaliana Pseudomonas syringae Q39214 CC-NBS-LRR I2 Lycopersicon esculentum Fusarium oxysporum f. sp. lycopersici race 2 AAD27815 NBS-LRR I2C-2 Lycopersicon esculentum Fusarium oxysporum unknown AAB63275 I2C-3 Lycopersicon esculentum Fusarium oxysporum unknown AAB63276 R Vigna mungo AAQ75745