I. Symbioses between Microorganisms II. Plants as Microbial Habitats 2. The Legume–Root Nodule Symbiosis 3. Agrobacterium and Crown Gall Disease 4. Mycorrhizae III. Animals as Microbial Habitats 5. The Mammalian Gut 6. The Rumen and Ruminant Animals 7. The Human Microbiome 8. Termites

上海交通大学：《微生物学 Microbiology》课程教学资源（双语课件）Lecture 15.2 Microbial Ecology（Nutrient Cycles, Biodegradation, and Bioremediation）

15.1 Populations, Guilds, and Communities 15.2 Environments and Microenvironments 环境与微环境 15.3 Microbial Growth on Surfaces and Biofilms 表面生长与生物膜 15.4 Terrestrial Environments 15.5 Freshwater habitats 淡水生境 15.6. Marine Microbiology

上海交通大学：《微生物学 Microbiology》课程教学资源（双语课件）Lecture 14.2 Methods in Microbial Ecology and Test（MEASURING MICROBIAL ACTIVITIES IN NATURE）

14.1 Enrichment and Isolation 14.2 Isolation 14.3 General Staining Methods 14.4 Phylogenetic staining using FISH 系统发育学染色: FISH技术 14.5 PCR Methods of Microbial Community Analysis 14.6 Microarrays and Microbial Diversity: Phylochips 系统发育学微阵列（芯片） 14.7 Environmental Genomics and Related Methods

13.15 Fermentations: Energetic and redox consideration 13.16 Fermentative Diversity 13.17 Fermentations lacking substrate level phosphorylation 13.18 Anaerobic respiration: : General Principles 13.19 Nitrate reduction and Denitrification硝酸还原与反硝化 13.20 Sulfate Reduction 硫还原 13.21 Methanogenesis 产甲烷过程 13.22 Other Electron Acceptors

13.6 The Energetics of Chemolithotrophy 13.7 Hydrogen Oxidation 氢的氧化 13.8 Oxidation of reduced sulfur compounds 还原态硫的氧化 13.9 Iron Oxidation 铁氧化 13.10 Nitrifying bacteria 硝化细菌 13.11 Anammox Major Biosyntheses: Autotrophy and Nitrogen Fixation 13.12 Autotrophic CO2 fixation: The Calvin cycle卡尔文循环固定CO2 13.13 Autotrophic CO2 fixation: Other autotrophic pathways in phototrophs 13.14 Nitrogenase and nitrogen fixation 固氮酶与固氮作用

13.1 Photosynthesis 13.2 Chlorophylls and Bacteriochlorophylls 叶绿素与菌绿素 13.3 Accessory pigments 其它色素 13.4 Anoxygenic Photosynthesis: purple bacteria as example 不产氧光合作用 13.5 Oxygenic photosythesis 产氧光合作用

上海交通大学：《微生物学 Microbiology》课程教学资源（双语课件）Lecture 12.2 Microbial Genomics（Gene Function and Regulation）

上海交通大学：《微生物学 Microbiology》课程教学资源（双语课件）Lecture 12.1 Microbial Genomics（Genomes and Genomics）