Using the P4-Xeon cluster HPCCC, Science Faculty, HKBU Hardware Configuration(cont) Compute nodes Dell pe2650. p4-Xeon 2, 8GHz X 2 2GB RAM. 36GB U160 SCSI HD Gigabit ethernet ports x 2 Gigabit Interconnect Extreme blackdiamond 6816 Gigabit ethernet 256Gb backplane 72 Gigabit ports(8 ports card x 9)
Using the P4-Xeon cluster HPCCC, Science Faculty, HKBU Hardware Configuration (cont) • Compute nodes – Dell PE2650, P4-Xeon 2.8GHz x 2 – 2GB RAM, 36GB U160 SCSI HD – Gigabit ethernet ports x 2 • Gigabit Interconnect – Extreme Blackdiamond 6816 Gigabit ethernet – 256Gb backplane – 72 Gigabit ports (8 ports card x 9)
Using the P4-Xeon cluster HPCCC, Science Faculty, HKBU Software installed Cluster operating system RockS2.3.2fromwww.rocksclusters.org · MPI and pvm libraries LAM/MPI 6.5.9. MPICH 1.2.5 Pvm3.4.3-6beolin Compilers GCC2.96.GCC3.2.3 PGI C/C++/f77/f90/hpf version 4.0 MATH libraries atlaS 3. 1. ScaLAPACK SPRNG 20a Application software MATLAB 6.1 with mPitB Gromacs 3. 1. 4. NAMD2.5b1. Gamess · Editors VI, pIco, emacs, Joe Queuing system OpenPBs 2.3.16, Maui scheduler
Using the P4-Xeon cluster HPCCC, Science Faculty, HKBU Software installed • Cluster operating system – ROCKS 2.3.2 from www.rocksclusters.org • MPI and PVM libraries – LAM/MPI 6.5.9, MPICH 1.2.5, PVM 3.4.3-6beolin • Compilers – GCC 2.96, GCC 3.2.3 – PGI C/C++/f77/f90/hpf version 4.0 • MATH libraries – ATLAS 3.4.1, ScaLAPACK, SPRNG 2.0a • Application software – MATLAB 6.1 with MPITB – Gromacs 3.1.4, NAMD2.5b1 , Gamess • Editors – vi, pico, emacs, joe • Queuing system – OpenPBS 2.3.16, Maui scheduler
Using the P4-Xeon cluster HPCCC, Science Faculty, HKBU Cluster OS.-ROCKS 2.3.2 Developed by npaci and sdsc Based on redhat 7.3 Allow setup of 64 nodes in 1 hour Useful command for users to monitor jobs in all nodes. E. g cluster -fork date cluster-ps morriS cluster-kill morris Web based management and monitoring http://tdgrocks.sci.hkbu.edu.hk
Using the P4-Xeon cluster HPCCC, Science Faculty, HKBU Cluster O.S. – ROCKS 2.3.2 • Developed by NPACI and SDSC • Based on RedHat 7.3 • Allow setup of 64 nodes in 1 hour • Useful command for users to monitor jobs in all nodes. E.g. – cluster-fork date – cluster-ps morris – cluster-kill morris • Web based management and monitoring – http://tdgrocks.sci.hkbu.edu.hk
Using the P4-Xeon cluster HPCCC, Science Faculty, HKBU Ganglia Ganglia Cluster Toolkit:: Closter Report- Microsoft Internet Explorer 榴案辑国核视①我的最要(工具①就明 上真·冈图的搜我最爱的媒的③,品图 址①http:/dmockscihkbuedahk/gangiarwebfrontend Cluster Report for Sat, 7 Jun 2003 15: 26: 33+0800 Get Fresh Data anglia (ROCKS Plysical View ten Metricload d_oney Last hour y Sorted descending v Teaching Development Grant Cluster>-Choose a Node v Overview of Teaching Development Grant Cluster Teaching Developnent Grant Cluster CPU last hour There are 49 nodes(98 CPUs)up and running There are no nodes down 口 User CPU口N PU口 systen CPU口 idle cp Current Chuster Load: 29.1.. 28.29 Teaching Developnent Grant Cluster MEM last hour Teaching Development Grant Cluster LOAD last hour 50C t- 口1 Minute Lo4d口 Nodes口 otal CPUs■ Running proce5se5 口 Memory Buttered口 Memo ry swapped■ Total In- ore Ne Snapshot of Teaching Development Grant Chister Legend 国国国国国画图图国国国画国国画国国国画国国 ahttp:/tdgrocksscihkbueduhw/ganeli-webfrontend/t-teachingDevelopmentGrantClnster&h-comp-pvfs-0-18&m-boed_one&rhour&s 额浮路
Using the P4-Xeon cluster HPCCC, Science Faculty, HKBU Ganglia
Using the P4-Xeon cluster HPCCC, Science Faculty, HKBU PBS Job queue 棺案辑①檢⑦我的最爱()工具(①就明田 ⊙上真凶沿搜得次我是的媒③,品,回 剩址①k数MuM如 webfrontend/addons ocks/queue php N閉移至 Teaching development grant Cluster Parallel Job Queue ROCKS Sat, 7 Jun 2003 15: 30: 17+0800 Physical Job Assignments Show only jobs for user. ld User Processors State Name RuntimeUpIDown 333 heluo RL计+GE1day,2020:34 R RI计+GE 338 mpu 339 mpu Rc11day.193544 R 19:3523 R lay,193458 Rc11day,193430 c11day.193334 344 R c11day.193237
Using the P4-Xeon cluster HPCCC, Science Faculty, HKBU PBS Job queue